On this page
Disclaimer: NFDI4Microbiota does not endorse or sponsor any of the external resources cited below.
Data Submission
- Lecture (slides) on Virus Genome Resources and Database Errors (NFDI4Microbiota)
- Workshop (slides) on Virus Database Overview (NFDI4Microbiota)
- Workshop (slides) on Overview of Virus Databases (NFDI4Microbiota)
Research Data Management (RDM)
Data and Software Publication
- Cheat Sheet on Data Repositories (NFDI4Microbiota)
- Cheat Sheet on Persistent Identifiers (PIDs) (NFDI4Microbiota)
- Workshop (slides) on Data Sharing and Publishing (NFDI4Microbiota)
Data Documentation
- Workshop (lesson) Biometadata-02: How to describe biological data? A primer to a FAIR approach for now and the future (NFDI4Microbiota)
- Workshop (slides) Data Documentation (NFDI4Microbiota)
- Workshop (slides) Metadata Quality Control (NFDI4Microbiota)
Data Organisation
- Workshop (lesson plan, slides) on Data Organisation (NFDI4Microbiota)
Digital Preservation
- Introductory Workshop (slides) on Digital Preservation (NFDI4Microbiota)
- Workshop (slides) on Long-Term Preservation and Archiving in NFDI Consortia (NFDI4Microbiota)
Electronic Lab Notebooks (ELNs)
- Demo (video) with eLabFTW (NFDI4Microbiota)
- Workshop (slides) on eLabFTW (NFDI4Microbiota)
- Workshop (slides) on Electronic Lab Notebooks (ELNs) (NFDI4Microbiota)
- Workshop (slides) on Electronic Lab Notebooks (ELNs) (NFDI4Microbiota)
- World Café (slides) on Electronic Lab Notebooks (ELNs) (NFDI4Microbiota)
Fundamentals
- Cheat Sheet on the Importance of Research Data Management (RDM) (NFDI4Microbiota)
- Foundational Workshop (slides) on Research Data Management (RDM) for Beginners (NFDI4Microbiota, FAIRagro)
- Handbook on How to Be Fair With Your Data (NFDI4Microbiota, FAIRsFAIR - Fostering FAIR Data Practices in Europe)
- Introductory Workshop (video) on Research Data Managment (RDM) (NFDI4Microbiota)
- Lecture (slides) on Research Data Management (NFDI4Microbiota)
- List of All Tools and Resources (RDMkit)
- List of Data Management Knowledge, Tools, and Training (Dutch Techcentre for Life Sciences)
- List of Data Stewardship Training (Dutch Techcentre for Life Sciences)
- Online Training Workshop (slides) on Research Data Management in (Bio-)Medicine (NFDI4Microbiota)
- Online Training Workshop (slides) on Research Data Management in (Bio-)Medicine (NFDI4Microbiota, NFDI4Health)
- RDM Instructional Videos (RWTH Aachen University)
- Workshop (slides) on Data Management and Governance (NFDI4Microbiota)
- Workshop (slides) on Optimizing Microbial Research Data Utilization (NFDI4Microbiota, de.NBI)
Open Science
- Talk (slides) on Open Science - Concepts, Practices and Challenges (NFDI4Microbiota)
Services
- The Turing Way
- Workshop (slides) on Borkflows: Bork Group Workflows on CloWM (NFDI4Microbiota)
Software
- Jupyter Notebook on the Introduction to pandas (NFDI4Microbiota)
- Jupyter Notebook on Python Basics (NFDI4Microbiota)
Specific Data Generation and Analysis Protocols
- Documentation on Microbiome Marker Gene Analysis With Qiime 2 (Bolyen et al. 2019)
- Free Online Workshop on Microbiome Bioinformatics with QIIME 2 (QIIME 2)
- Lecture (video) on Microbial Community Analysis with Chipster (Chipster Tutorials)
- Tutorial on DADA2 Pipeline (Benjamin Callahan)
- Tutorials on Bioinformatics (Melbourne Bioinformatics)
- Workshop on Microbiome Bioinformatic Analysis (BIO514 - Bioinformatics)
(Meta-)Genomics
- A Review of Methods and Databases for Metagenomic Classification and Assembly (Breitwieser et al. 2019)
- Lessons (video) on Metagenomics (Bioinformatics Virtual Coordination Network)
- Review on Clinical Metagenomics (Chiu and Miller 2019)
- Workshop on Analysing Metagenomic Assemblies Using MGnify (BiATA (Bioinformatics: from Algorithms to Applications) 2021)
- Workshop (video) on Metagenomics Analysis (UCLA QCBio Collaboratory)
Other
- Collection of tutorials developed and maintained by the worldwide Galaxy community (Galaxy Training Network (GTN))
- Handbook to Reproducible, Ethical and Collaborative Data Science (The Turing Way Community and Scriberia 2024)
- List of Training on Life Sciences (EMBL-EBI)